Introduction: Agricultural biodiversity, also known as agrobiodiversity, refers to useful plant species which can be utilised as food and other agronomic uses. In South Africa, there is a growing concern regarding the constant decline of both wild and cultivated indigenous flora. Previous research suggests that this is due to overreliance on alien species that are continually being used to replace indigenous vegetation. Objectives: This study explores the role of agrobiodiversity on environmental management and its impact on human ecology. It also seeks to promote the management of indigenous flora and to highlight the role that it plays on the broader ecosystem. Discussion: While the development of agroecosystems and the integration of modern farming practices are vital for agroecology and food security, it is also important to value and preserve the useful indigenous species of the native counties. This is especially important at a time where the world is experiencing global warming as a result of climate change. To address the existing environmental challenges, there is a great need for different role-players to devise strategies that are geared towards maintaining balance on the ecosystem. This drive could be better achieved through inclusive agro-production systems which include the integration of both indigenous and exotic crop species in the farming systems, as well as the use of sustainable and environmental friendly production methods. Recommendations: The embrace of agrobiodiversity is a first step towards environmental management. It is also important for ecological succession between humans and natural environments. In essence, while there is a need for the adaptation of foreign vegetation in the agroecosystem, there is also a parallel need for the preservation of indigenous species. Conclusion: Agricultural diversity presents an opportunity to bring about ecological balance between mankind and their environment. On this basis, there is thus a need for diversified agronomic systems.